Citations & Footnotes

A typical example is shown here[1]

If you are using PubMed it is very simple. For e.g This is sentence you want have the PubMed article with id 26234761 as reference for [2].

[(:cite:pmid26234761>{{pmid>long:26234761}})]

The syntax is quite easy:

{{pmid>01234567}} OR {{pmcid>01234567}}
or {{pmid>long:01234567}} OR {{pmcid>long:01234567}}

You can use the same reference again in the same article. In this case you just need to use [2]

[(:cite:pmid26234761)]

.

If the article you are citing do not have a PubMed ID (PMID) the easiest option would be to use this syntax

[(:cite:name>citation)]

For e.g

[(:cite:knuth1969>Knuth, Donald E. The Art of Computer Programming, Volume 2: Seminumerical Algorithms, First edition, Addison-Wesley, 1969, ISBN 0-201-03802-1)]

.

The above will give you[3]

Alternatively use http://sumsearch.org/cite/ and generate the HTML code (blog format) and enter it like shown below

[(:cite:28536680><html>de Campos FPF, Benvenuti LA (2017)
<a href="https://www.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&retmode=ref&cmd=prlinks&id=28536680">Eisenmenger syndrome.</a> 
<i>Autops Case Rep</i>
7 (1):5-7.  DOI: <a href="http://dx.doi.org/10.4322/acr.2017.006">10.4322/acr.2017.006</a>
PMID: <a href="https://pubmed.gov/28536680">28536680</a></html>)]

Although not recommended you could use it without HTML like this

[(:cite:28536680>de Campos FPF, Benvenuti LA (2017) Eisenmenger syndrome. Autops Case Rep 7 (1):5-7. DOI: 10.4322/acr.2017.006 PMID: 28536680.)]

Suppose you want just a footnote then do it like this

[(note1>this is a footnote)]

.

Here “note1” is the name of the note so that you can reuse the note.

If you do not have the PMID but you have HTML for it then use the https://pandoc.org/try to convert HTML or whatever to dokuwiki syntax and use it like this [4]

[(:cite:maron2013>Maron BJ, Haas TS, Maron MS, Lesser JR, Browning JA, Chan RH et al. (2014) [[https://www.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&retmode=ref&cmd=prlinks&id=24589281|Left atrial remodeling in hypertrophic cardiomyopathy and susceptibility markers for atrial fibrillation identified by cardiovascular magnetic resonance.]] //Am J Cardiol// 113 (8):1394-400. DOI: [[http://dx.doi.org/10.1016/j.amjcard.2013.12.045|10.1016/j.amjcard.2013.12.045]] PMID: [[https://pubmed.gov/24589281|24589281]])]

There also standard readymade ones like

[(:fixme>This part has to be reworked.)]

or

[(:todo>[//[[:missing_citation|citation needed]]// ])]

or

[(:cite:todo>[[:missing_citation|citation needed]])]

or 1)

[(:ref:todo>[//[[:missing_reference|reference needed]]//])]

Trying wikipedia style but this does not seem to work at present 1)

This is an example of a book reference

[(:cite:KnuthAoP2>> author : Donald Knuth title : Arts of Programming, Volume 2: Seminumerical Algorithms edition : Third Edition published : 1997 publisher : Addison-Wesley note-pages : xiv + 762 pp. isbn : 0-201-89684-2 url : [[http://en.wikipedia.org/wiki/The_Art_of_Computer_Programming|http://en.wikipedia.org/wiki/The_Art_of_Computer_Programming]] )]

and this another example of a book reference where the chapter is also available

[(:cite:KnuthAoP2Ch3>> author : Donald Knuth title : Arts of Programming, Volume 2: Seminumerical Algorithms chapter : Random numbers edition : Third Edition published : 1997 publisher : Addison-Wesley note-pages : Ch. 3 isbn : 0-201-89684-2 url : [[http://en.wikipedia.org/wiki/The_Art_of_Computer_Programming|http://en.wikipedia.org/wiki/The_Art_of_Computer_Programming]] )]

and in case of a journal it would be like this

[(:cite:KnuthLCE1985>> author : Donald Knuth title : Deciphering a linear congruential encryption journal : IEEE Transactions on Information Theory volume : 31(1) published : Jan 1985 publisher : IEEE note-pages : 49-52 issn : 0018-9448 url : [[http://ieeexplore.ieee.org/search/freesrchabstract.jsp?tp=&arnumber=1056997|http://ieeexplore.ieee.org/search/freesrchabstract.jsp?tp=&arnumber=1056997]] )]

The plugin supports the following fields:

Name Label Description Defined in Used in
Basic Harvard
address Address Address of the publisher. r, d n
author Author List of the authors. r, d r, n
authors Authors
booktitle Book title The title of the book, if only part of it is being cited. r, d n
chapter Chapter Name of a book chapter. r, d n
direct Harvard referencing system allows two types of formatting for references: when author name is directly mentioned in the text and when it isn't. Using direct field you can control this formatting for each individual reference. r r
edition Edition Book edition. r, d n
isbn ISBN Book number. r, d n
issn ISSN
journal Journal Name of a journal or magazine. r, d n
month Month Month of publication. r, d n
note-name Note name Fully qualified note name including the namespace. d1 r2
note-page Note page Number of pages in a book or page range for an article. r, d n
note-pages Note pages
note-text Note text Text of the note. r, d n n3
page Page Number of pages in a book or page range for an article. When used in a reference, this field defines page that is referred by this particular reference. To define page range for the note from a reference use note-pages field. r, d r, n
pages Pages
published Published Date of publication. Alternatively it can be specifies with month and year fields. r, d r, n
publisher Publisher Address and name of the publisher. r, d n
ref-author Reference author RefNotes plugin doesn't do any processing on the list of authors. If there are too many of them to include in the reference, you can use ref-authors to provide an alternative list just for the references. r, d r
ref-authors Reference authors
title Title Title of a book or an article. r, d n4 n
url URL5 Wraps the note-text or title into a link. r, d n n
volume Volume Volume or issue number of a journal. r, d n
year Year Year of publication. r, d r, n

Legend:

d — defined in reference database.
r — defined/used in references.
n — used in notes.

In order to use in columns see below


1. a de Campos FPF, Benvenuti LA (2017) Eisenmenger syndrome. Autops Case Rep 7 (1):5-7. DOI:10.4322/acr.2017.006 PMID: 28536680
2. a, b Beghi E, Giussani G, Sander JW. The natural history and prognosis of epilepsy. Epileptic Disord. 2015 Sep;17(3):243-53. doi: 10.1684/epd.2015.0751.
[PMID: 26234761] [DOI: 10.1684/epd.2015.0751]

3. a Knuth, Donald E. The Art of Computer Programming, Volume 2: Seminumerical Algorithms, First edition, Addison-Wesley, 1969, ISBN 0-201-03802-1


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